Python SequenceCollection.ids方法代碼示例- 純淨天空

本文整理匯總了Python中skbio.core.alignment.SequenceCollection.ids方法的典型用法代碼示例。

如果您正苦於以下問題：Python SequenceCollection.ids方法的具體用法？ 當前位置:首頁>>代碼示例>>Python>>正文 本文整理匯總了Python中skbio.core.alignment.SequenceCollection.ids方法的典型用法代碼示例。

如果您正苦於以下問題：PythonSequenceCollection.ids方法的具體用法？PythonSequenceCollection.ids怎麽用？PythonSequenceCollection.ids使用的例子？那麽恭喜您,這裏精選的方法代碼示例或許可以為您提供幫助。

您也可以進一步了解該方法所在類skbio.core.alignment.SequenceCollection的用法示例。

在下文中一共展示了SequenceCollection.ids方法的1個代碼示例，這些例子默認根據受歡迎程度排序。

您可以為喜歡或者感覺有用的代碼點讚，您的評價將有助於我們的係統推薦出更棒的Python代碼示例。

示例1:SequenceCollectionTests ​點讚6 ​ #需要導入模塊:fromskbio.core.alignmentimportSequenceCollection[as別名] #或者:fromskbio.core.alignment.SequenceCollectionimportids[as別名] classSequenceCollectionTests(TestCase): """TestsoftheSequenceCollectionclass""" defsetUp(self): """Initializevaluestobeusedintests """ self.d1=DNASequence('GATTACA',id="d1") self.d2=DNASequence('TTG',id="d2") self.d1_lower=DNASequence('gattaca',id="d1") self.d2_lower=DNASequence('ttg',id="d2") self.r1=RNASequence('GAUUACA',id="r1") self.r2=RNASequence('UUG',id="r2") self.r3=RNASequence('U-----UGCC--',id="r3") self.i1=DNASequence('GATXACA',id="i1") self.seqs1=[self.d1,self.d2] self.seqs1_lower=[self.d1_lower,self.d2_lower] self.seqs2=[self.r1,self.r2,self.r3] self.seqs3=self.seqs1+self.seqs2 self.seqs1_t=[('d1','GATTACA'),('d2','TTG')] self.seqs2_t=[('r1','GAUUACA'),('r2','UUG'), ('r3','U-----UGCC--')] self.seqs3_t=self.seqs1_t+self.seqs2_t self.s1=SequenceCollection(self.seqs1) self.s1_lower=SequenceCollection(self.seqs1_lower) self.s2=SequenceCollection(self.seqs2) self.s3=SequenceCollection(self.seqs3) self.empty=SequenceCollection([]) self.invalid_s1=SequenceCollection([self.i1]) deftest_init(self): """Initializationfunctionsasexpectedwithvariedinputtypes """ SequenceCollection(self.seqs1) SequenceCollection(self.seqs2) SequenceCollection(self.seqs3) SequenceCollection([]) deftest_init_fail(self): """initializationwithsequenceswithoverlappingidsfails """ s1=[self.d1,self.d1] self.assertRaises(SequenceCollectionError,SequenceCollection,s1) deftest_init_validate(self): """initializationwithvalidationfunctionsasexpected """ SequenceCollection(self.seqs1,validate=True) SequenceCollection(self.seqs1,validate=True) #can'tvalidateself.seqs2asaDNASequence self.assertRaises(SequenceCollectionError,SequenceCollection, self.invalid_s1,validate=True) deftest_from_fasta_records(self): """Initializationfromlistoftuplesfunctionsasexpected """ SequenceCollection.from_fasta_records(self.seqs1_t,DNASequence) SequenceCollection.from_fasta_records(self.seqs2_t,RNASequence) SequenceCollection.from_fasta_records(self.seqs3_t,NucleotideSequence) deftest_contains(self): """inoperatorfunctionsasexpected """ self.assertTrue('d1'inself.s1) self.assertTrue('r2'inself.s2) self.assertFalse('r2'inself.s1) deftest_eq(self): """equalityoperatorfunctionsasexpected """ self.assertTrue(self.s1==self.s1) self.assertFalse(self.s1==self.s2) #differentobjectscanbeequal self.assertTrue(self.s1==SequenceCollection([self.d1,self.d2])) self.assertTrue(SequenceCollection([self.d1,self.d2])==self.s1) #SequenceCollectionswithdifferentnumberofsequencesarenotequal self.assertFalse(self.s1==SequenceCollection([self.d1])) classFakeSequenceCollection(SequenceCollection): pass #SequenceCollectionsofdifferenttypesarenotequal self.assertFalse(self.s1==FakeSequenceCollection([self.d1,self.d2])) self.assertFalse(self.s1==Alignment([self.d1,self.d2])) #SequenceCollectionswithdifferentsequencesarenotequal self.assertFalse(self.s1==SequenceCollection([self.d1,self.r1])) deftest_getitem(self): """getitemfunctionsasexpected """ self.assertEqual(self.s1[0],self.d1) self.assertEqual(self.s1[1],self.d2) self.assertEqual(self.s2[0],self.r1) self.assertEqual(self.s2[1],self.r2) #.........這裏部分代碼省略......... 開發者ID:BANSHEE-，項目名稱:scikit-bio，代碼行數:103，代碼來源:test_alignment.py 注：本文中的skbio.core.alignment.SequenceCollection.ids方法示例整理自Github/MSDocs等源碼及文檔管理平台，相關代碼片段篩選自各路編程大神貢獻的開源項目，源碼版權歸原作者所有，傳播和使用請參考對應項目的License；未經允許，請勿轉載。

相關方法 SequenceCollection.from_fasta_records SequenceCollection.to_fasta SequenceCollection.degap SequenceCollection.iteritems SequenceCollection.toFasta SequenceCollection.sequence_lengths SequenceCollection.sequence_count SequenceCollection.lower SequenceCollection.k_word_frequencies SequenceCollection.is_valid SequenceCollection.distances SequenceCollection.is_empty SequenceCollection.int_map SequenceCollection.ids SequenceCollection.identifiers SequenceCollection.get_seq SequenceCollection.distribution_stats SequenceCollection.upper